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Publications Search Results

The following are sorted by reverse chronological order of publication.

106 publications found:

  • Hu, J.C. and Karp, P.D. and Keseler, I.M. and Krummenacker, M. and Siegele, D.A. What we can learn about Escherichia coli through application of Gene Ontology. Trends in Microbiology, vol. 17, no. 7, pp. 269-278, July 2009.  [Details]

  • Keseler, I.M. and Bonavides-Martinez, C. and Collado-Vides, J. and Gama-Castro, S. and Gunsalus, R.P. and Johnson, D.A. and Krummenacker, M., and Nolan, L.M. and Paley, S. and Paulsen, I.T. and Peralta-Gil, M. and Santos-Zavaleta, A. and Shearer, A.G. and Karp, P.D. EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Research, vol. 37, pp. D464-D470, Jan 2009.  [PDF, Details]

  • Lee T.J., Paulsen I., Karp P.D. Annotation-based inference of transporter function. Bioinformatics, vol. 24, pp. i259-67, 2008.  [Details]

  • Caspi R and Karp PD. Using the MetaCyc pathway database and the BioCyc database collection. Curr Protoc Bioinformatics, vol. 20, pp. 1.17.1-1.17.51, 2007.  [Details]

  • Caspi R, Foerster H, Fulcher C. A, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee S. Y, Shearer A. G, Tissier C, Walk T. C, Zhang P, Karp P. D. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Research, vol. 36, pp. D623-D631, 2007.  [PDF, Details]

  • Feist A.M., Henry C.S., Reed J.L., Krummenacker M., Joyce A.R., Karp P.D., Broadbelt L.J., Hatzimanikatis V., Palsson B.Ø. A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information. Mol Syst Biol, vol. 3, no. 121, pp. 1-18, 2007.  [Details]

  • Green M.L., Karp P.D. Using genome context data to identify specific types of functional associations in Pathway/Genome Databases. Bioinformatics, vol. 23, pp. i205-11, 2007.  [Details]

  • Karp, P.D. and Keseler, I.M. and Shearer, A. and Latendresse, M. and Krummenacker, M. and Paley, S.M. and Paulsen, I. and Collado-Vides, J. and Gama-Castro, S. and Peralta-Gil, M. and Santos-Zavaleta, A. and Penaloza-Spinola, M.I. and Bonavides-Martinez, C. and Ingraham, J. Multidimensional annotation of the Escherichia coli K-12 genome. Nucleic Acids Research, vol. 35, no. 22, pp. 7577-7590, 2007.  [PDF, Details]

  • Karp P.D., Keseler I.M., Latendresse A. Shearer M., Krummenacker M., Paulsen S.M. Paley I.T., Collado-Vides J., Peralta-Gil S. Gama-Castro M., Penaloza-Spinola A. Santos-Zavaleta M.I., Bonavides-Martinez C., Ingraham J. Multidimensional annotation of the Escherichia coli K-12 genome. Nuc Acids Res, vol. 35, pp. 7577-90, 2007.  [Details]

  • Pouliot Y., Karp P.D. A survey of orphan enzyme activities. BMC Bioinformatics, vol. 8, p. 244, 2007.  [PDF, Details]

  • Caspi, R. and Foerster, H. and Fulcher, C.A. and Hopkinson, R. and Ingraham, J. and Kaipa, P. and Krummenacker, M. and Paley, S. and Pick, J. and Rhee, S.Y. and Tissier, C. and Zhang, P. and Karp, P.D. MetaCyc: a multiorganism database of metabolic pathways and enzymes.. Nucleic Acids Research, vol. 34, pp. D511-D516, Jan 2006.  [PDF, Details]

  • Green M.L., Karp P.D. The Outcomes of Pathway Database Computations Depend on Pathway Ontology. Nuc Acids Res, vol. 34, pp. 3687-97, 2006.  [PDF, Details]

  • J. Shi , Karp P.D. Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests. Nuc Acids Res, vol. 34, pp. 2438-44, 2006.  [Details]

  • J. Shi , Karp P.D. Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests. Nuc Acids Res, vol. 34, pp. 2438-44, 2006.  [PDF, Details]

  • Lee T.J., Pouliot Y., Wagner V., Gupta P., Stringer-Calvert D.W.J, Tenenbaum J.D., Karp P.D. BioWarehouse: a bioinformatics database warehouse toolkit. BMC Bioinformatics, vol. 7, p. 170, 2006.  [PDF, Details]

  • Paley S.M., Green M.L., Krummenacker M., Karp P.D. Creating Fungal Pathway/Genome Databases Using Pathway Toolsin Applied Mycology and Biotechnology, Elsevier, 2006.  [Details]

  • Paley S.M., Karp P.D. The Pathway Tools Cellular Overview Diagram and Omics Viewer. Nuc Acids Res, vol. 34, pp. 3771-8, 2006.  [PDF, Details]

  • Salgado H., Santos-Zavaleta A., Peralta-Gil S. Gama-Castro M., Martinez-Antonio M. I. Penaloza-Spinola A., Karp P. D., Collado-Vides J. The comprehensive updated regulatory network of Escherichia coli K-12. BMC Bioinformatics, vol. 7, p. 5, 2006.  [Details]

  • Zhang P., Foerster H., Tissier C. P., Mueller L., Paley S., Karp P. D., Rhee S. Y. MetaCyc and AraCyc. Metabolic Pathway Databases for Plant Research. Plant Physiol, vol. 138, no. 1, pp. 27-37, May 2005.  [Details]

  • Green, M.L. and Karp, P.D. Genome Annotation Errors in Pathway Databases Due to Semantic Ambiguity in Partial EC Numbers. Nucleic Acids Research, vol. 33, no. 13, pp. 4035-4039, 2005.  [Details]

  • Karp, P.D., Ouzounis, C.A., Moore-Kochlacs, C., Goldovsky, L., Kaipa,. Expansion of the BioCyc Collection of Pathway/Genome Databases to 160 Genomes. Nucleic Acids Research, vol. 33, pp. 6083-9, 2005.  [Details]

  • Keseler, I.M. and Collado-Vides, J. and Gama-Castro, S. and Ingraham, J. and Paley, S. and Paulsen, I.T. and Peralta-Gil, M. and Karp, P.D. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Research, vol. 33, pp. D334-D337, Jan 2005.  [PDF, Details]

  • Krummenacker, M., Paley, S., Mueller, L., Yan, T., and Karp, P.D. Querying and Computing with BioCyc Databases. Bioinformatics, vol. 21, pp. 3454-5, 2005.  [Details]

  • P. Larsson, P.C.F. Oyston, P. Chain, M.C. Chu, M. Duffield, H.K. Fuxelius, E. Garcia, G. Halltorp, D. Johansson, K.E. Isherwood, P.D. Karp, E. Larsson, Y. Liu, S. Michell, J. Prior, R. Prior, S. Malfatti, A. Sjostedt, K. Svensson, N. Thompson, L. Vergez, J.K. Wagg, B.W. Wren, L.E. Lindler, S.G.E. Andersson, M. Forsman, and R.W. Titball. The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nature Genetics, vol. 37, pp. 153-9, 2005.  [Details]

  • Pouliot, Y., Lee, T.J., Wagner, V. and Karp, P.D. Identifying Candidate Genes Using The BioWarehouse: A Case Study, in Eighteenth International Conference on Systems Engineering, pp. 332-40, 2005.  [Details]

  • Zhang, P., Foerster, H., Tissier, C.P., Mueller, L., Paley, S., Karp,. MetaCyc and AraCyc. Metabolic Pathway Databases for Plant Resarch. Plant Physiol, vol. 138, no. 1, pp. 27–37, 2005.  [Details]

  • Green, M.L. and Karp, P.D. A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases. BMC Bioinformatics, vol. 5, no. 76, 2004.  [Details]

  • Karp P.D. Call for an enzyme genomics initiative. Genome Biology, vol. 5, pp. 401.1-401.3, 2004.  [Details]

  • Karp P.D., Arnaud M., Collado-Vides J., Paulsen I.T., Saier M.H. Jr. The E. coli EcoCyc Database: No Longer Just a Metabolic Pathway Database. ASM News, vol. 70, no. 1, pp. 25-30, 2004.  [Details]

  • Karp P.D., Paley S., Krieger C.J., Zhang P. An Evidence Ontology for use in Pathway/Genome Databases, pp. 190-201, 2004.  [Details]

  • Krieger, C. J. and Zhang, P and Mueller, L. A. and Wang, A. and Paley, S. and Arnaud, M. and Pick, J. and Rhee, S. Y. and Karp, P. D. MetaCyc: a multiorganism database of metabolic pathways and enzymes. Nucleic Acids Research, vol. 32, pp. D438-D442, 2004.  [Details]

  • Roberts R.J., Karp , Kasif S., Linn S., Buckley M.R. An Experimental Approach to Genome Annotation, Technical Report . American Society for Microbiology, 2004.  [Details]

  • Romero P., Karp P.D. Using Functional and Organizational Information to Improve Genome-Wide Computational Prediction of Transcription Units on Pathway/Genome Databases. Bioinformatics, vol. 20, pp. 709-17, 2004.  [Details]

  • Romero, P., Wagg, J., Green, M.L., Kaiser, D., Krummenacker, M. and Karp, P.D. Computational prediction of human metabolic pathways from the complete human genome. Genome Biology, vol. 6, no. R2, 2004.  [Details]

  • Romero P., Wagg J., Green M.L., Kaiser M., Karp P.D. Computational Prediction of Human Metabolic Pathways from the Complete Human Genome. Genome Biology, vol. 6, no. 1, pp. 1-17, 2004.  [PDF, Details]

  • Yeh I., Hanekamp T., Tsoka S., Karp P.D., Altman R.B. Computational analysis of Plasmodium falciparum metabolism: Organizing genomic information to facilitate drug discovery. Genome Research, vol. 14, no. 5, pp. 917-24, 2004.  [Details]

  • Karp P.D. The MetaCyc Metabolic Pathway Databasein Metabolic Engineering, Horizon Scientific Press, 2003.  [Details]

  • Karp P.D. The Pathway Tools software and its Role in Anti-Microbial Drug Discoveryin Microbial Genomics and Drug Discovery, Marcel Dekker, Inc., 2003.  [Details]

  • Karp P.D. What database management system(s) should be employed in bioinformatics applications?. OMICS, vol. 7, no. 1, pp. 35-6, 2003.  [Details]

  • Karp P.D., Paley S. HpyCyc: Helicobacter pylori Pathway/Genome Database. Genome Letters, vol. 2, pp. 10-11, 2003.  [Details]

  • Romero P., Karp P.D. PseudoCyc, a Pathway/Genome Database for Pseudomonas aeruginosa. J. Mol. Microbiol. Biotech., vol. 5, no. 4, pp. 230-9, 2003.  [Details]

  • Yeh I., Karp P.D., Noy N.F., Altman R.B. Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics, vol. 19, no. 2, pp. 241-8, 2003.  [Details]

  • Paley, S. and Karp, P.D. Evaluation of computational metabolic-pathway predictions for Helicobacter pylori.. Bioinformatics, vol. 18, no. 5, pp. 715-24, May 2002.  [Details]

  • Karp, P.D. and Paley, S. and Romero, P. The Pathway Tools Software. Bioinformatics, vol. 18, pp. S225-S232, 2002.  [Details]

  • Karp, P.D., Riley, M., Paley, S., and Pellegrini-Toole, A. The MetaCyc Database. Nucleic Acids Research, vol. 30, no. 1, pp. 59-61, 2002.  [Details]

  • Karp, P.D., Riley, M., Saier, M., Paulsen, I.T., Collado-Vides, J., Paley, S., Pellegrini-Toole, A., Bonavides, C., and Gama-Castro, S. The EcoCyc Database. Nucleic Acids Research, vol. 30, no. 1, pp. 56-58, 2002.  [PDF, Details]

  • Karp P.D. Many Genbank entries for complete microbial genomes violate the Genbank standard. Comparative and Functional Genomics, vol. 2, pp. 25-27, 2001.  [Details]

  • Karp, P.D. Pathway Databases: A Case Study in Computational Symbolic Theories. Science, vol. 293, pp. 2040-4, 2001.  [Details]

  • Karp P.D., Paley J. Database verification studies of SWISS-PROT and Genbank. 2001.  [Details]

  • Romero, P. and Karp, P.D. Nutrient-related Analysis of Pathway/Genome Databases, in Proceedings of the Pacific Symposium on Biocomputing, World Scientific, Singapore, pp. 471-482, 2001.  [PDF, Details]

  • Wood D.W., Setubal J.C., Kaul R., Monks J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida Jr. N.F., Woo Y., Paulsen I.T., Eisen J.A., Karp P.D. et al. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science, vol. 294, pp. 2317-23, 2001.  [Details]

  • Karp, P.D. An Ontology for Biological Function Based on Molecular Interactions. Bioinformatics, vol. 16, no. 3, pp. 269-285, 2000.  [PS, Details]

  • Karp, P.D., Riley, M., Paulsen, I.T., Paley, S., Pellegrini-Toole, A. The EcoCyc and MetaCyc Databases. Nucleic Acids Research, vol. 28, no. 1, pp. 56-59, 2000.  [PDF, Details]

  • McEntire, R., Karp, P., Abernethy, N., Benton, D., Helt, G., DeJongh, M., Kent, R., Kosky, A., Lewis, S., Hodnett, D., Neumann, E., Olken, F., Pathak, D., Tarczy-Hornoch, P., Toldo, L., and Topaloglou, T. An Evaluation of Ontology Exchange Languages for Bioinformatics, in Proceedings of the 2000 Conference on Intelligent Systems for Molecular Biology, 2000.  [PDF, Details]

  • Ouzonis, C. and Karp, P.D. Global Properties of the Metabolic Map of Escherichia coli. Genome Research, vol. 10, p. 568, 2000.  [PDF, Details]

  • Karp, Peter D. and Chaudhri, Vinay K. and Thomere, Jerome F. XOL: An XML-Based Ontology Exchange Language, Technical Note 559. AI Center, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, Jul 1999.  [PDF, Details]

  • Karp P.D. Using the EcoCyc Databasein Nucleic Acid and Protein Databases and How To Use Them, Academic Press, 1999.  [Details]

  • Karp P.D. What we do not know about sequence analysis and sequence databases. Bioinformatics, vol. 14, no. 9, pp. 753-754, 1999.  [Details]

  • Karp, P.D. EcoCyc: The Resource and the Lessons Learnedin Bioinformatics Databases and Systems, pp. 47-62, Kluwer Academic Publishers, 1999.  [Details]

  • Karp, P.D., Krummenacker, M., Paley, S., and Wagg, J. Integrated Pathway/Genome Databases and Their Role in Drug Discovery. Trends in Biotechnology, vol. 17, no. 7, pp. 275-281, 1999.  [PS, Details]

  • Karp, Peter D. and Chaudhri, Vinay K. and Paley, Suzanne M. A Collaborative Environment for Authoring Large Knowledge Bases. Journal of Intelligent Information Systems, vol. 13, pp. 155-194, 1999.  [PDF, Details]

  • Karp P., Krummenacker M., Paley S., Wagg J. Integrated pathway/genome databases and their role in drug discovery. Trends in Biotechnology, vol. 17, no. 7, pp. 275-81, 1999.  [PDF, Details]

  • Karp P., Riley M., Paley A., Krummenacker M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc Acids Res, vol. 27, no. 1, pp. 55-58, 1999.  [Details]

  • Chaudhri, Vinay K. and Farquhar, Adam and Fikes, Richard and Karp, Peter D. and Rice, James P. OKBC: A Programmatic Foundation for Knowledge Base Interoperability, in Proceedings of the AAAI-98, Madison, WI, 1998.  [PS, Details]

  • Karp, P.D. Metabolic Databases. Trends in Biochemical Sciences, vol. 23, pp. 114-116, 1998.  [Details]

  • Karp P., Riley M., Paley A., Krummenacker M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc Acids Res, vol. 26, no. 1, pp. 50-53, 1998.  [Details]

  • Chaudhri, Vinay K. and Farquhar, Adam and Fikes, Richard and Karp, Peter D. and Rice, James P. The Generic Frame Protocol 2.0. Artificial Intelligence Center, SRI International, Jul 1997.  [PS, Details]

  • Karp, Peter D. and Chaudhri, Vinay K. and Paley, Suzanne M. A Collaborative Environment for Authoring Large Knowledge Bases. , Apr 1997.  [PS, Details]

  • Chaudhri, Vinay K. and Karp, Peter D. Querying Schema Information. Proceedings of the 4th International Workshop Knowledge Representation Meets Databases (KRDB 97), pp. 4-1 to 4-6, 1997.  [PS, Details]

  • des Jardins, M., Karp, P.D., Krummenacker, M., Lee, T.J., and Ouzounis, C. Prediction of Enzyme Classification from Protein Sequence without the Use of Protein Similarity, in Proceedings of the ISMB-97 Conference, AAAI Press, Menlo Park, CA, 1997.  [PDF, Details]

  • Forsythe R. G., Karp P. D., Mavrovouniotis M.L. Estimation of Equilibrium Constants Using Automated Group Contribution Methods. Computer Applications in the Biosciences, vol. 13, no. 5, pp. 537-543, 1997.  [Details]

  • Karp, P. and Riley, M. and Paley, S. and Pellegrini-Toole, A. and Krummenacker, M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc. Acids Res., vol. 25, no. 1, 1997.  [PDF, Details]

  • Karp P.D. Use of Metabolic Databases to Guide Target Selection for Anti-Microbial Drug Designin Drug Metabolism Databases and High-Throughput Testing During Drug Design and Development, Blackwell Science Ltd, 1997.  [Details]

  • Paley, S.M., Lowrance, J.D., and Karp, P.D. A Generic Knowledge-Base Browser and Editor, in Proceedings of the 1997 National Conference on Artificial Intelligence, 1997.  [PS, Details]

  • Tomb, J.-F., Karp, P.D., et al. The Complete Genome Sequence of the Gastric Pathogen Helicobacter pylori. Nature, vol. 388, pp. 539-547, 1997.  [Details]

  • Karp, P. and Riley, M. and Paley, S. and Pellegrini-Toole, A. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc. Acids Res., vol. 24, no. 1, pp. 32–39, 1996.  [PDF, Details]

  • Karp, P. D. A Protocol for Maintaining Multidatabase Referential Integrity, in Proceedings of the 1996 Pacific Symposium on Biocomputing, 1996.  [PS, Details]

  • Karp, P.D. Database Links are a Foundation for Interoperability. Trends in Biotechnology, vol. 14, pp. 273-279, 1996.  [Details]

  • Karp, P. D. and Ouzounis, C. and Paley, S. M. HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae, in Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, AAAI Press, 1996.  [PS, Details]

  • Karp, P.D. and Paley, S. Integrated Access to Metabolic and Genomic Data. Journal of Computational Biology, vol. 3, no. 1, pp. 191-212, 1996.  [PS, Details]

  • Paley, S. and Karp, P.D. Adapting EcoCyc for Use on the World Wide Web. Gene, vol. 172, no. 1, pp. GC43-50, 1996.  [PDF, Details]

  • Karp, P. A strategy for database interoperation. Journal of Computational Biology, vol. 2, no. 4, pp. 573-586, 1995.  [PS, Details]

  • Karp, P. D. and Myers, K. and Gruber, T. The Generic Frame Protocol, in Proceedings of the 1995 International Joint Conference on Artificial Intelligence, pp. 768-774, 1995.  [PS, Details]

  • Karp, P. D. and Paley, S. M. Knowledge Representation in the Large, in Proceedings of the 1995 International Joint Conference on Artificial Intelligence, pp. 751-758, 1995.  [PS, Details]

  • Paley, S. M. and Karp, P. D. Adapting CLIM Applications for Use on the World Wide Web, in Proceedings of the Association of Lisp Users Meeting and Workshop, pp. 1-9, 1995.  [PS, Details]

  • Karp, Peter D. Distinguishing Knowledge Bases and Data Bases: Who's on First and What's on Second, Technical Note 546. AI Center, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, Aug 1994.  [PDF, Details]

  • Karp, Peter D., Paley, Suzanne M., and Greenberg, Ira. A Storage System for Scalable Knowledge Representation, Technical Note 547. AI Center, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, Aug 1994.  [PDF, Details]

  • P. Karp (ed.) Report of the Workshop on the Interconnection of Molecular Biology Databases, 1994.  [PS, Details]

  • Karp P. Proc 1995 Meeting on the Interconnection of Molecular Biology Databases. Available via URL
    http://www.ai.sri.com/pkarp/mimbd/95/abstracts.html, 1994.  [Details]

  • Karp, P. and Mavrovouniotis, M. Representing, Analyzing, and Synthesizing Biochemical Pathways. IEEE Expert, vol. 9, no. 2, pp. 11-21, 1994.  [PS, Details]

  • Karp, P. and Paley, S. M. Representations of Metabolic Knowledge: Pathways, in Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, AAAI Press, 1994.  [PS, Details]

  • Karp, P. and Paley, S. M. Automated Drawing of Metabolic Pathways, in Third International Conference on Bioinformatics and Genome Research, 1994.  [PS, Details]

  • Karp, P. D. and Lowrance, J. D. and Strat, T. M. and Wilkins, D. E. The Grasper-CL Graph Management System. LISP and Symbolic Computation, vol. 7, pp. 245-282, 1994.  [PS, Details]

  • Karp, P. D. and Paley, S. M. and Greenberg, I. A Storage System for Scalable Knowledge Representation, in Proceedings of the Third International Conference on Information and Knowledge Management, 1994.  [PS, Details]

  • Karp, P. and Riley, M. Representations of Metabolic Knowledge, in Proceedings of the First International Conference on Intelligent Systems for Molecular Biology, AAAI Press, pp. 207-215, 1993.  [PS, Details]

  • Karp, P. D. Design methods for scientific hypothesis formation and their application to molecular biology. Machine Learning, vol. 12, pp. 89-116, 1993.  [PS, Details]

  • Karp, P.D. Frame Representation and Relational Data Bases: Alternative Information-Management Technologies for Systematicsin Advanced Computer Methods for Systematic Biology: Artificial Intelligence, Database Systems, Computer Vision, p. 560, Johns Hopkins University Press, 1993.  [Details]

  • Karp, Peter D. A Qualitative Biochemistry and its Application to the Regulation of the Tryptophan Operonin Artificial Intelligence and Molecular Biology, AAAI Press, 1993.  [Details]

  • Karp, P. D. The Design Space of Frame Knowledge Representation Systems, Technical Note 520. AI Center, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, Oct 1992.  [PDF, Details]

  • Karp, P. D. A knowledge base of the chemical compounds of intermediary metabolism. CABIOS, vol. 8, no. 4, pp. 347-357, 1992.  [PS, Details]

  • Peter D. Karp, John D. Lowrance, Thomas M and Wilkins, David E. The Grasper-CL Graph Management System, Technical Note 521. AI Center, SRI International, 333 Ravenswood Ave., Menlo Park, CA 94025, Jan 1992.  [PDF, Details]

  • Karp, P. D. Artificial intelligence methods for theory representation and hypothesis formation. CABIOS, vol. 7, no. 3, pp. 301-308, 1991.  [Details]

  • Karp P.D. Hypothesis Formation as Designin Computational Models of Discovery and Theory Formation, Morgan Kaufmann Publishers, 1990.  [Details]

  • Karp P.D. Hypothesis Formation and Qualitative Reasoning in Molecular Biology, PhD Thesis. Stanford University Computer Science Department, June 1989.  [Details]

  • Karp P.D., Friedland P.E. Coordinating the Use of Qualitative and Quantitative Knowledge in Declarative Device Modelingin Artificial Intelligence, Modeling and Simulation, John Wiley and Sons, 1989.  [Details]

  • Karp P.D., Wilkins D.C. An Analysis of the Distinction Between Deep and Shallow Expert Systems. International Journal of Expert Systems, vol. 1, no. 2, pp. 1-32, 1989.  [Details]

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