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Publications Search Results

The following are sorted by reverse chronological order of publication.

22 publications found:

  • Karp P.D., Weaver D., Paley S., Kubo C. Fulcher, Kothari A., Krummenacker M., Weerasinge P. Subhraveti, Gama-Castro S., Muniz-Rascado A.M. Huerta, Bonavides-Martinez C., Peralta-Gil V. Weiss, Santos-Zavaleta A., Schroder I., Mackie A., Gunsalus R., Collado-Vides J., Keseler I.M., Paulsen I. The EcoCyc Databasein EcoSal Plus: Cellular and Molecular Biology of E. coli, Salmonella, and the Enterobacteriaceae, ASM Press, 2014.  [Details]

  • Mackie A., Paley S., Keseler I. M., Paulsen A. Shearer, Karp P.D. Addition of Escherichia coli K--12 Growth-Observation and Gene Essentiality Data to the EcoCyc database. J Bacteriol., vol. 196, no. 5, pp. 982-8, 2014.  [Details]

  • Mackie "A., Paley S., Keseler I. M., Shearer A., Paulsen I. T., Karp" P. D. Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database. J Bacteriol, vol. 196, no. 5, pp. 982-988, 2014.  [Details]

  • Weaver S., Keseler I. M., Mackie A., Paulsen I. T., Karp" P. D. A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database. BMC Systems Biology, vol. 8, p. 79, 2014.  [Details]

  • Keseler M., Mackie A., Peralta-Gil M., Santos-Zavaleta A., Gama-Castro S., Bonavides-Martinez C., Fulcher C., Huerta A. M., Kothari A., Krummenacker M., Latendresse M., Muniz-Rascado L., Ong Q., Paley S., Shearer I. Schroder A. G., Subhraveti P., Travers M., Weerasinghe D., Weiss V., Collado-Vides J., Gunsalus R. P., Paulsen I., Karp" P. D. EcoCyc: Fusing model organism databases with systems biology. Nucleic Acids Res, vol. 41, pp. D605-12, 2013.  [Details]

  • Keseler, I.M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A.G., Mackie, A., Paulsen, I., Gunsalus, R.P., and Karp, P.D. EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Adics Research, vol. 39, pp. D583-90, 2011.  [PDF, Details]

  • Karp P.D. The Multiple Scientific Disciplines Served by EcoCycin Systems Biology and Biotechnology of Escherichia coli, Springer, 2009.  [Details]

  • Keseler, I.M. and Bonavides-Martinez, C. and Collado-Vides, J. and Gama-Castro, S. and Gunsalus, R.P. and Johnson, D.A. and Krummenacker, M., and Nolan, L.M. and Paley, S. and Paulsen, I.T. and Peralta-Gil, M. and Santos-Zavaleta, A. and Shearer, A.G. and Karp, P.D. EcoCyc: a comprehensive view of Escherichia coli biology. Nucleic Acids Research, vol. 37, pp. D464-D470, Jan 2009.  [PDF, Details]

  • Keseler, I.M. and Collado-Vides, J. and Gama-Castro, S. and Ingraham, J. and Paley, S. and Paulsen, I.T. and Peralta-Gil, M. and Karp, P.D. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Research, vol. 33, pp. D334-D337, Jan 2005.  [PDF, Details]

  • Karp P.D., Arnaud M., Collado-Vides J., Paulsen I.T., Saier M.H. Jr. The E. coli EcoCyc Database: No Longer Just a Metabolic Pathway Database. ASM News, vol. 70, no. 1, pp. 25-30, 2004.  [Details]

  • Karp, P.D., Riley, M., Saier, M., Paulsen, I.T., Collado-Vides, J., Paley, S., Pellegrini-Toole, A., Bonavides, C., and Gama-Castro, S. The EcoCyc Database. Nucleic Acids Research, vol. 30, no. 1, pp. 56-58, 2002.  [PDF, Details]

  • Karp, P.D., Riley, M., Paulsen, I.T., Paley, S., Pellegrini-Toole, A. The EcoCyc and MetaCyc Databases. Nucleic Acids Research, vol. 28, no. 1, pp. 56-59, 2000.  [PDF, Details]

  • Karp P.D. Using the EcoCyc Databasein Nucleic Acid and Protein Databases and How To Use Them, Academic Press, 1999.  [Details]

  • Karp, P.D. EcoCyc: The Resource and the Lessons Learnedin Bioinformatics Databases and Systems, pp. 47-62, Kluwer Academic Publishers, 1999.  [Details]

  • Karp P., Riley M., Paley A., Krummenacker M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc Acids Res, vol. 27, no. 1, pp. 55-58, 1999.  [Details]

  • Karp D., Riley M., Paley S. M., Pellegrini-Toole A., Krummenacker" M. EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res, vol. 26, no. 1, pp. 50-53, 1998.  [Details]

  • Karp P., Riley M., Paley A., Krummenacker M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc Acids Res, vol. 26, no. 1, pp. 50-53, 1998.  [Details]

  • Karp D., Riley M., Paley S. M., Pellegrini-Toole A., Krummenacker" M. EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism. Nucleic Acids Res, vol. 25, no. 1, pp. 43-51, 1997.  [Details]

  • Karp, P. and Riley, M. and Paley, S. and Pellegrini-Toole, A. and Krummenacker, M. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc. Acids Res., vol. 25, no. 1, 1997.  [PDF, Details]

  • Karp D., Riley M., Paley S. M., Pelligrini-Toole" A. EcoCyc: an encyclopedia of Escherichia coli genes and metabolism. Nucleic Acids Res, vol. 24, no. 1, pp. 32-39, 1996.  [Details]

  • Karp, P. and Riley, M. and Paley, S. and Pellegrini-Toole, A. EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism. Nuc. Acids Res., vol. 24, no. 1, pp. 32–39, 1996.  [PDF, Details]

  • Paley, S. and Karp, P.D. Adapting EcoCyc for Use on the World Wide Web. Gene, vol. 172, no. 1, pp. GC43-50, 1996.  [PDF, Details]

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