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Publication Details

The EcoCyc and MetaCyc Databases

by Karp, P.D., Riley, M., Paulsen, I.T., Paley, S., Pellegrini-Toole, A.

Nucleic Acids Research, vol. 28, no. 1, pp. 56-59, 2000.

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Associated Projects

EcoCyc

EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism

EcoCyc is a bioinformatics database that describes the genome and the biochemical machinery of Escherichia coli. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli. EcoCyc integrates information from more than 30,000 scientific publications.

MetaCyc

MetaCyc: Metabolic Pathway Database

MetaCyc is a database of nonredundant, experimentally elucidated metabolic pathways. MetaCyc contains more than 2500 pathways from more than 2800 different organisms (circa 2012). The MetaCyc data were curated from more than 50,000 scientific publications. MetaCyc describes metabolic pathways, reactions, enzymes, and metabolites.

AIC Personnel

Name Title E-mail
Karp, Peter D Director, Bioinformatics Research Group
Paley, Suzanne Computer Scientist

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