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Current Projects

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BioCyc

BioCyc Database Collection

The BioCyc Database Collection is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism.

BsubCyc

BsubCyc: The Bacillus subtilis Model-Organism Database

BsubCyc is a model-organism database that describes the genome and the biochemical machinery of Bacillus subtilis. The long-term goal of the project is to describe the molecular catalog of the B. subtilis cell and the functions of each of its molecular parts, to facilitate a system-level understanding of B. subtilis.

EcoCyc

EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism

EcoCyc is a bioinformatics database that describes the genome and the biochemical machinery of E. coli. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli.

Integrated Learning

Integrated Learning

The Integrated Learning project is focused on developing machine learning technology that would enable a system to learn general planning knowledge from user demonstrations of processes.

LAGR

Learning Applied to Ground Robots

LAGR is a DARPA project to develop autonomous offroad navigation, using techniques based on realtime vision and learning.

MetaCyc

MetaCyc: Metabolic Pathway Database

MetaCyc is a database of nonredundant, experimentally elucidated metabolic pathways. MetaCyc contains more than 1800 pathways from more than 2200 different organisms (circa 2012). The MetaCyc data were curated from more than 33,000 scientific publications. MetaCyc describes metabolic pathways, reactions, enzymes, and metabolites.

Neptune

Neptune

A user-centric, integrated planning and scheduling system that assists the user in exploring the rich space of plans and associated resource assignment options in complex, real-world domains. Each component of the system (user, planner, and scheduler) reacts to the actions of the other, resolving conflicts, and iteratively refining the solution until acceptable.

FREEDIUS

Open Source Three-Dimensional Image Understanding System

FREEDIUS is a portable, open-source image understanding workbench. It is the successor to the 3DIUS/CME system.

Pathway Tools

Pathway Tools

Pathway Tools is a systems biology software system that supports several use cases: Development of organism-specific database that integrate many bioinformatics datatypes, from genomes to pathways. Development of metabolic-flux models using flux-balance analysis. Scientific visualization, web publishing, and querying of organism-specific databases. Analysis of omics datasets. Computational prediction of metabolic pathways, metabolic pathway hole fillers, and operons. Comparative analyses.

pnat

PNAT

Overview is coming soon.

This website does not contain information on all of our past or present projects.
For further information please contact us.

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