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BioCyc Database Collection

BioCyc  Principal Investigator:  Peter D Karp

Mailing address:
AI Center
SRI International
333 Ravenswood Avenue
Menlo Park, CA 94025-3493

AIC Program:  Bioinformatics Research Group

Project home page at http://biocyc.org/

   Project Description

[Project home page]

   Personnel

Name Title E-mail
Altman, Tomer Scientific Application Programmer
Caspi, Ron MetaCyc Curator
Holland, Tim Software Engineer
Karp, Peter D Director, Bioinformatics Research Group
Keseler, Ingrid M Senior Scientific Database Curator
Kothari, Anamika Scientific Datatabase Curator
Krummenacker, Markus Bioinformatics Scientist
Ong, Quang Scientific Application Programmer
Paley, Suzanne Computer Scientist
Pick, John Alumnus
Subhraveti, Pallavi Scientific Programmer

   Publications

Showing most recent 5 out of 12  [View All]

  • Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res., vol. 42, no. 1, pp. D459-D471, 2014.  [PDF, Details]

  • Caspi R, Dreher K and Karp PD. The challenge of constructing, classifying, and representing metabolic pathways. FEMS Microbiol Lett., vol. 45, no. 2, pp. 85-93, August 2013.  [Details]

  • Mario Latendresse, Jeremiah P. Malerich, Mike Travers, and Peter D. Karp. Accurate Atom-Mapping Computation for Biochemical Reactions. Journal of Chemical Information and Modeling, September 2012.  [Details]

  • Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res, vol. 40, no. D1, pp. D742-D753, 2012.  [PDF, Details]

  • Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.. Nucleic Acids Res, vol. 38, pp. D473-D479, 2010.  [PDF, Details]

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