SRI International
Room AE215
333 Ravenswood Avenue
Menlo Park, CA 94025-3493
USA
Phone: (650) 859-4013
Fax: (650) 859-3735
Home Page: http://www.ai.sri.com/~latendre
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Pathway ToolsPathway Tools is a systems biology software system that supports several use cases: Development of organism-specific database that integrate many bioinformatics datatypes, from genomes to pathways. Development of metabolic-flux models using flux-balance analysis. Scientific visualization, web publishing, and querying of organism-specific databases. Analysis of omics datasets. Computational prediction of metabolic pathways, metabolic pathway hole fillers, and operons. Comparative analyses. |
The following publications are selected by the author. They are listed in reverse chronological order.
[View All 22 Publications]
Danny Dubé, Mario Latendresse, and Pascal Tesson. Conservative Groupoids Recognize only Regular Languages. Proceedings of the International Conference on Language and Automata Theory and Applications (LATA), 2012. [Details]
Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp. Construction and completion of flux balance models from pathway databases. Bioinformatics, vol. 28, pp. 388-96, 2012. [Details]
Peter Karp, Mario Latendresse, Ron Caspi. The Pathway Tools Pathway Prediction Algorithm. Standards in Genomic Sciences, vol. 5, no. 3, 2011. [Details]
Latendresse M., Karp P. D. Web-Based Metabolic Network Visualization with a Zooming User Interface. BMC Bioinformatics, vol. 12, pp. 176-84, 2011. [Details]
Mario Latendresse and Peter D. Karp. An Advanced Web Query Interface for Biological Databases. DATABASE - The Journal of Biological Databases and Curation, 2010. [Details]
Mario Latendresse. Simple and Efficient Compilation of List Comprehension in Common Lisp, in Proceedings of the International Lisp Conference, pp. 125-130, Apr 2007. [PDF, Details]
Mario Latendresse and Marc Feeley. Generation of fast interpreters for Huffman compressed bytecode. Science of Computer Programming, vol. 57, no. 3, pp. 295-317, Sep 2005. [Details]
Mario Latendresse. Rewrite Systems for Symbolic Evaluation of C-like Preprocessing, in Proceedings of CSMR'04, pp. 165-173, Mar 2004. [PDF, Details]
Mario Latendresse. Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Values, in Proc. of the 7th European Conference on Software Maintenance and Reengineering (CSMR), pp. 170-179, Mar 2003. [PDF, Details]
Mario Latendresse. A persistent web application for distribution of weather information in Scheme, in International Lisp Conference, Oct 2002. [PDF, Details]
