333 Ravenswood Avenue
Menlo Park, CA 94025-3493
Phone: (650) 859-4013
Fax: (650) 859-3735
Home Page: http://www.ai.sri.com/~latendre
Pathway Tools is a systems biology software system that supports several use cases: Development of organism-specific database that integrate many bioinformatics datatypes, from genomes to pathways. Development of metabolic-flux models using flux-balance analysis. Scientific visualization, web publishing, and querying of organism-specific databases. Analysis of omics datasets. Computational prediction of metabolic pathways, metabolic pathway hole fillers, and operons. Comparative analyses.
The following publications are selected by the author. They are listed in reverse chronological order.
[View All 22 Publications]
Danny Dubé, Mario Latendresse, and Pascal Tesson. Conservative Groupoids Recognize only Regular Languages. Proceedings of the International Conference on Language and Automata Theory and Applications (LATA), 2012. [Details]
Mario Latendresse, Markus Krummenacker, Miles Trupp, Peter D. Karp. Construction and completion of flux balance models from pathway databases. Bioinformatics, vol. 28, pp. 388-96, 2012. [Details]
Peter Karp, Mario Latendresse, Ron Caspi. The Pathway Tools Pathway Prediction Algorithm. Standards in Genomic Sciences, vol. 5, no. 3, 2011. [Details]
Latendresse M., Karp P. D. Web-Based Metabolic Network Visualization with a Zooming User Interface. BMC Bioinformatics, vol. 12, pp. 176-84, 2011. [Details]
Mario Latendresse and Peter D. Karp. An Advanced Web Query Interface for Biological Databases. DATABASE - The Journal of Biological Databases and Curation, 2010. [Details]
Mario Latendresse and Marc Feeley. Generation of fast interpreters for Huffman compressed bytecode. Science of Computer Programming, vol. 57, no. 3, pp. 295-317, Sep 2005. [Details]
Mario Latendresse. Fast Symbolic Evaluation of C/C++ Preprocessing Using Conditional Values, in Proc. of the 7th European Conference on Software Maintenance and Reengineering (CSMR), pp. 170-179, Mar 2003. [PDF, Details]