AI Center ::Dr Ingrid M Keseler

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Dr Ingrid M Keseler

Scientific Database Curator
Artificial Intelligence Center

SRI International
Room AE218
333 Ravenswood Avenue
Menlo Park, CA 94025-3493
USA

Phone: (650) 859-5872
Fax: (650) 859-3735

Email:

Current Projects

BioCyc Database Collection

The BioCyc Database Collection is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms.

EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism
EcoCyc is a bioinformatics database that describes the genome and the biochemical machinery of E. coli. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli.

Publications

The following are in reverse chronological order of publication.

Riley, M., and Abe, T., and Arnaud, M.B., and Berlyn, M.K.B., and Blattner, F.R., and Chaudhuri, R.R., and Glasner, J.D., and Horiuchi, T., and Keseler, I.M., and Kosuge, T., and Mori, H., and Perna, N.T., and Plunkett, G.3rd, and Rudd, K.E., and Serres, M.H., and Thomas, G.H., and Thomson, N.R., and Wishart, D., and Wanner, B.L. Escherichia coli K-12: a cooperatively developed annotation snapshot � 2005. Nucleic Acids Research, vol. 34, pp. 1-9, 2006. [Details]
Keseler, I.M. and Collado-Vides, J. and Gama-Castro, S. and Ingraham, J. and Paley, S. and Paulsen, I.T. and Peralta-Gil, M. and Karp, P.D. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Research, vol. 33, pp. D334-D337, Jan 2005. [PDF, Details]

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