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Tim Holland*

Software Engineer

SRI International
333 Ravenswood Avenue
Menlo Park CA 94025-3493

Phone:  650-859-4216
Fax: (650) 859-3735

Email: 

Alumnus of the Artificial Intelligence Center

Current Projects

BioCyc

BioCyc Database Collection

The BioCyc Database Collection is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism.

Pathway Tools

Pathway Tools

Pathway Tools is a systems biology software system that supports several use cases: development of organism-specific database that integrate many bioinformatics datatypes, from genomes to pathways; Development of metabolic-flux models using flux-balance analysis; scientific visualization, web publishing, and querying of organism-specific databases; analysis of omics datasets; and Computational prediction of metabolic pathways, metabolic pathway hole fillers, and operons.

Past Projects

TransPAL

TransPAL: Transitioning PAL Technologies

The TransPAL project is transitioning a number of technologies developed on the DARPA PAL program for use by various members of the Armed Services.

Publications

The following are in reverse chronological order of publication.
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