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 AIC Home   >   People   >   Dr Ron Caspi
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Dr Ron Caspi

Scientific Database Curator
Artificial Intelligence Center

SRI International
Room AE217
333 Ravenswood Avenue
Menlo Park, CA 94025-3493
USA

Phone:  (650) 859-5323
Fax:  (650) 859-3735

Email: 

   Current Projects

BioCyc

BioCyc Database Collection

The BioCyc Database Collection is a collection of Pathway/Genome Databases. Each database in the BioCyc collection describes the genome and metabolic pathways of a single organism, with the exception of the MetaCyc database, which is a reference source on metabolic pathways from many organisms.
 

MetaCyc

MetaCyc: Metabolic Pathway Database
The MetaCyc metabolic pathway database contains pathways from over 150 different organisms. MetaCyc describes metabolic pathways, reactions, enzymes, and substrate compounds. The MetaCyc data were gathered from a variety of literature and on-line sources, and contain citations to the source of each pathway.
 

   Publications

The following are in reverse chronological order of publication.

  • Caspi, R. and Foerster, H. and Fulcher, C.A. and Hopkinson, R. and Ingraham, J. and Kaipa, P. and Krummenacker, M. and Paley, S. and Pick, J. and Rhee, S.Y. and Tissier, C. and Zhang, P. and Karp, P.D. MetaCyc: a multiorganism database of metabolic pathways and enzymes.. Nucleic Acids Research, vol. 34, pp. D511-D516, Jan 2006.  [PDF, Details]

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